ERS Monograph - Current issue: 2019 The lung microbiome

This issue

European Respiratory Society Monograph, Vol. 83. 2019
ISBN (electronic): 978-1-84984-102-3
10.1183/2312508X.erm8319

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This issue

European Respiratory Society Monograph, Vol. 83. 2019
ISBN (electronic): 978-1-84984-102-3
10.1183/2312508X.erm8319

<< Previous issue



About this issue

Studying the lung microbiome requires a specialist approach to sampling, laboratory techniques and statistical analysis. This Monograph introduces the techniques used and discusses how respiratory sampling, 16S rRNA gene sequencing, metagenomics and the application of ecological theory can be used to examine the respiratory microbiome. It examines the different components of the respiratory microbiome: viruses and fungi in addition to the more frequently studied bacteria. It also considers a range of contexts from the paediatric microbiome and how this develops to disease of all ages including  asthma and chronic obstructive pulmonary disease, chronic suppurative lung diseases, interstitial lung diseases, acquired pneumonias, transplantation, cancer and HIV, and the interaction of the respiratory microbiome and the environment.

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 [+]  Full text journal article Preface
Robert Bals, John R. Hurst
Eur Respir Monogr 2019; 83: v-vi
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 [+]  Full text journal article vii Guest Editors
Eur Respir Monogr 2019; 83: vii-viii
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 [+]  Congress or journal article abstract Full text journal article ix Introduction
Michael J. Cox, Markus J. Ege, Erika von Mutius
Eur Respir Monogr 2019; 83: ix-xi
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 [+]  Full text journal article xii List of abbreviations
Eur Respir Monogr 2019; 83: xii
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 [+]  Congress or journal article abstract Full text journal article Sampling the lung microbiome
Robert P. Dickson, Michael J. Cox
Eur Respir Monogr 2019; 83: 1-17
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 [+]  Congress or journal article abstract Full text journal article 18 Techniques: culture, identification and 16S rRNA gene sequencing
Gisli G. Einarsson, Sébastien Boutin
Eur Respir Monogr 2019; 83: 18-34
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 [+]  Congress or journal article abstract Full text journal article 35 Applying clinical metagenomics for the detection and characterisation of respiratory infections
Themoula Charalampous, Gemma L. Kay, Justin O'Grady
Eur Respir Monogr 2019; 83: 35-49
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 [+]  Congress or journal article abstract Full text journal article 50 Applying ecological theories in lung microbiome research: lessons learned from microbial ecology and evolution?
Bärbel Ulrike Foesel, Stefan Pfeiffer, Abilash Chakravarthy Durai Raj, Susanne Krauss Etschmann, Michael Schloter
Eur Respir Monogr 2019; 83: 50-66
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 [+]  Congress or journal article abstract Full text journal article 67 The early-life microbiome: the key to respiratory health?
Emma M. de Koff, Celine Pattaroni, Benjamin J. Marsland, Debby Bogaert
Eur Respir Monogr 2019; 83: 67-87
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 [+]  Congress or journal article abstract Full text journal article 88 From culturomics to metagenomics: the mycobiome in chronic respiratory diseases
Louise-Eva Vandenborght, Raphaël Enaud, Noémie Coron, David Denning, Laurence Delhaes
Eur Respir Monogr 2019; 83: 88-118
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 [+]  Congress or journal article abstract Full text journal article 119 Viruses and the lung microbiome
William G. Flight, Christopher J.R. Turkington, Martha R.J. Clokie
Eur Respir Monogr 2019; 83: 119-139
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 [+]  Congress or journal article abstract Full text journal article 140 The lung microbiome in obstructive airways disease: potential pathogenetic roles
Kian Fan Chung, Gary B. Huffnagle, Yvonne J. Huang
Eur Respir Monogr 2019; 83: 140-157
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 [+]  Congress or journal article abstract Full text journal article 158 The lung microbiome in chronic suppurative lung disease: cystic fibrosis and non-cystic fibrosis bronchiectasis
Geraint Rogers, Yvonne J. Huang
Eur Respir Monogr 2019; 83: 158-172
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 [+]  Congress or journal article abstract Full text journal article 173 Interstitial lung disease
David N. O'Dwyer, Bethany B. Moore, Philip L. Molyneaux
Eur Respir Monogr 2019; 83: 173-187
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 [+]  Congress or journal article abstract Full text journal article 188 The lung bacterial microbiome in community-acquired and nosocomial pneumonia
Lieuwe D.J. Bos, Jamie Rylance, Stephen B. Gordon
Eur Respir Monogr 2019; 83: 188-194
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 [+]  Congress or journal article abstract Full text journal article 195 Compromised immunity and the microbiome: transplantation, cancer and HIV
Eric Bernasconi, John-David Aubert, Angela Koutsokera, Laurent P. Nicod, Homer L. Twigg III
Eur Respir Monogr 2019; 83: 195-215
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 [+]  Congress or journal article abstract Full text journal article 216 The environmental microbiota and asthma
Pirkka V. Kirjavainen, Heidi Hyytiäinen, Martin Täubel
Eur Respir Monogr 2019; 83: 216-239
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 [+]  Congress or journal article abstract Full text journal article 240 Challenges, impact and the future
Michael J. Cox, Markus J. Ege, Erika von Mutius
Eur Respir Monogr 2019; 83: 240-244
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